species:   Opsin
pid:       PID1925
parent:    n_os_milR_8
paralog:   
locus:     JAAVMX010000001.1:1070753-1070842
matures:   ['UGUUCGGUCGCCGCGACGGU', 'AAAUGAUGGCGACCAAGAACAGA']
srr:       SRR12952904
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952904.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952904.cram JAAVMX010000001.1:1070753-1070842

0 out of bounds
3 alignments
3 proper strand
1 stranded perfect matches

  **************************                                     ***********************  
CCAAUAAAUGAUGGCGACCAAGAACAGAGGACACGGGUUGGCCCCGAACCACUCCGUUCGGGUCUCUUGUUCGGUCGCCGCGACGGUUGG
(((((...((.((((((((..((((((.((((..((.....))((((((......)))))))))).))))))))))))))))...)))))
-------------------------------------------------------------------UGUUCGGUCGCCGCGACGGU--- l=20 a=0 c
-----AAAUGAUGGCGACCAAGAACAGA-------------------------------------------------------------- l=23 a=0 c*
-------------------------------------------------------------------UGUUCGGUCGCCGCGACGGUU-- l=21 a=1 ma
----UAAAUGAUGGCGACCAAGAACAGA-------------------------------------------------------------- l=24 a=0 ma*

-------------------------------------------------------------------UGUUCGGUCGCCGCGACGGUU-- l=21 a=1 (ma)
-------------------------------------------------------------------UGUUCGGUCGCCGCGAuGGUU-- l=21 a=1 
----------------------------------------------------UCCGUUCGGGUCcCUUGUUC------------------ l=20 a=1 

mb-01011
ax-1001011
ku-01
ss-110111101100
fn-011
